Journal of Genomics cover

Journal of Genomics is a peer-reviewed journal publishing papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Types of articles include:

  • Research paper
  • Short research communication
  • Review or mini-review
  • Commentary
  • Database or software paper

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Research Paper
SELfies and CELLfies: Whole Genome Sequencing and Annotation of Five Antibiotic Resistant Bacteria Isolated from the Surfaces of Smartphones, An Inquiry Based Laboratory Exercise in a Genomics Undergraduate Course at the Rochester Institute of Technology
Anutthaman Parthasarathy, Narayan H. Wong, Amanda N. Weiss, Susan Tian, Sara E. Ali, Nicole T. Cavanaugh, Tyler M. Chinsky, Chelsea E. Cramer, Aditya Gupta, Rakshanda Jha, Loryn K. Johnson, Elizabeth D. Tuason, Lauren M. Klafehn, Varada Krishnadas, Ryan J. Musich, Jennifer M. Pfaff, Spencer C. Richman, Alexandria J. Shumway, André O. Hudson
J. Genomics 2019; 7: 26-30. doi:10.7150/jgen.31911
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Complete Genome Sequence of Arthrobacter sp. Strain MN05-02, a UV-Resistant Bacterium from a Manganese Deposit in the Sonoran Desert
Konosuke Mark Ii, Nobuaki Kono, Ivan Glaucio Paulino-Lima, Masaru Tomita, Lynn Justine Rothschild, Kazuharu Arakawa
J. Genomics 2019; 7: 18-25. doi:10.7150/jgen.32194
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Genome Sequencing and Annotation of Bacillus subtilis UBBS-14 to Ensure Probiotic Safety
Ayesha Sulthana, Suvarna G Lakshmi, Ratna Sudha Madempudi
J. Genomics 2019; 7: 14-17. doi:10.7150/jgen.31170
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Draft Genome Sequence of the Oleaginous Yeast Apiotrichum porosum (syn. Trichosporon porosum) DSM 27194
Olga Gorte, Habibu Aliyu, Anke Neumann, Katrin Ochsenreither
J. Genomics 2019; 7: 11-13. doi:10.7150/jgen.32210
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
Mats Töpel, Matthew I.M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Adrian K. Clarke, Anna Godhe
J. Genomics 2019; 7: 7-10. doi:10.7150/jgen.30559
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genomic Insights Into A Novel, Alkalitolerant Nitrogen Fixing Bacteria, Azonexus sp. Strain ZS02
Zohier B. Salah, Christopher J. Charles, Paul N. Humphreys, Andrew. P. Laws, Simon P. Rout
J. Genomics 2019; 7: 1-6. doi:10.7150/jgen.28153
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
De novo male gonad transcriptome draft for the marine mussel Perumytilus purpuratus with a focus on its reproductive-related proteins
Carolina Briones, José J. Nuñez, Montse Pérez, Daniela Espinoza-Rojas, Cristian Molina-Quiroz, Ricardo Guiñez
J. Genomics 2018; 6: 127-132. doi:10.7150/jgen.27864
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan
Kohei Ito, Masafumi Harada, Nobuyoshi Nakajima, Shigeki Yamamura, Masaru Tomita, Haruo Suzuki, Seigo Amachi
J. Genomics 2018; 6: 122-126. doi:10.7150/jgen.27741
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Isolation and genomic characterization of six endophytic bacteria isolated from Saccharum sp (sugarcane): Insights into antibiotic, secondary metabolite and quorum sensing metabolism
Anutthaman Parthasarathy, Han Ming Gan, Narayan H. Wong, Michael A. Savka, KayLee K. Steiner, Kurtis R. Henry, André O. Hudson
J. Genomics 2018; 6: 117-121. doi:10.7150/jgen.28335
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Whole-Genome Sequence of the Novel Antarctobacter heliothermus Strain SMS3, Found in Association with the Marine Diatom Skeletonema marinoi
Mats Töpel, Matthew I.M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K. Clarke
J. Genomics 2018; 6: 113-116. doi:10.7150/jgen.27637
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Expression and network analysis of YBX1 interactors for identification of new drug targets in lung adenocarcinoma
Suriya Narayanan Murugesan, Birendra Singh Yadav, Pramod Kumar Maurya, Amit Chaudhary, Swati Singh, Ashutosh Mani
J. Genomics 2018; 6: 103-112. doi:10.7150/jgen.20581
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Mitochondrial genomes of the South American frogs Eupsophus vertebralis and E. emiliopugini (Neobatrachia: Alsodidae) and their phylogenetic relationships
Elkin Y. Suárez-Villota, Camila A. Quercia, José J. Nuñez
J. Genomics 2018; 6: 98-102. doi:10.7150/jgen.26122
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genetic Diversity of Bovine Major Histocompatibility Complex Class II DRB3 locus in cattle breeds from Asia compared to those from Africa and America
Sunday O. Peters, Tanveer Hussain, Adeyemi S. Adenaike, Matthew A Adeleke, Marcos De Donato, Jordan Hazzard, Masroor E Babar, Ikhide G. Imumorin
J. Genomics 2018; 6: 88-97. doi:10.7150/jgen.26491
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genome Wide Analysis Reveals the Extrinsic Cellulolytic and Biohydrogen Generating Abilities of Neocallimastigomycota Fungi
Ayyappa Kumar Sista Kameshwar, Wensheng Qin
J. Genomics 2018; 6: 74-87. doi:10.7150/jgen.25648
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Isolation and Identification of an Anthracimycin Analogue from Nocardiopsis kunsanensis, a Halophile from a Saltern, by Genomic Mining Strategy
Fernanda L. Sirota, Falicia Goh, Kia-Ngee Low, Lay-Kien Yang, Sharon C. Crasta, Birgit Eisenhaber, Frank Eisenhaber, Yoganathan Kanagasundaram, Siew Bee Ng
J. Genomics 2018; 6: 63-73. doi:10.7150/jgen.24368
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Identification of Sex-associated SNPs of Greater Amberjack (Seriola dumerili)
Junya Kawase, Jun-ya Aoki, Kazuhisa Hamada, Akiyuki Ozaki, Kazuo Araki
J. Genomics 2018; 6: 53-62. doi:10.7150/jgen.24788
[Abstract] [Full text] [PDF] [PubMed] [PMC]