Volume 5; 2017

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Short Research Communication
First Draft Genome Sequence of the Dourine Causative Agent: Trypanosoma Equiperdum Strain OVI
Laurent Hébert, Bouziane Moumen, Anthony Madeline, Sascha Steinbiss, Latifa Lakhdar, Nick Van Reet, Philippe Büscher, Claire Laugier, Julien Cauchard, Sandrine Petry
J. Genomics 2017; 5: 1-3. doi:10.7150/jgen.17904
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Detection of Intestinal Pathogens in River, Shore, and Drinking Water in Lima, Peru
David C. Grothen, Sydney J. Zach, Paul H. Davis
J. Genomics 2017; 5: 4-11. doi:10.7150/jgen.18378
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium)
Heerman Kumar Sandra Kumar, Han Ming Gan, Mun Hua Tan, Wilhelm Wei Han Eng, Hazel A. Barton, André O. Hudson, Michael A. Savka
J. Genomics 2017; 5: 12-15. doi:10.7150/jgen.17863
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer
Srinivas V Koduru, Amit K Tiwari, Sprague W Hazard, Milind Mahajan, Dino J Ravnic
J. Genomics 2017; 5: 16-31. doi:10.7150/jgen.18856
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Complete genome sequence and functional study of the fibrinolytic enzyme-producing bacterium Leuconostoc holzapfelii 5H4, a silage probiotic
Hye Sun Kim, Ouk Kyu Han, Youn-Sig Kwak
J. Genomics 2017; 5: 32-35. doi:10.7150/jgen.19407
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Metagenomic Analysis of a Complex Community Present in Pond Sediment
Vivek Negi, Rup Lal
J. Genomics 2017; 5: 36-47. doi:10.7150/jgen.16685
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Whole-genome Sequencing of Vibrio sinaloensis T47, a Tropical Marine Isolate with Quorum Sensing Properties
Nur Izzati Mohamad, Kah Yan How, Wai-Fong Yin, Kok-Gan Chan
J. Genomics 2017; 5: 48-50. doi:10.7150/jgen.16163
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Draft Genome Sequence of Roseovarius sp. A-2, an Iodide-Oxidizing Bacterium Isolated from Natural Gas Brine Water, Chiba, Japan
Tri Yuliana, Nobuyoshi Nakajima, Shigeki Yamamura, Masaru Tomita, Haruo Suzuki, Seigo Amachi
J. Genomics 2017; 5: 51-53. doi:10.7150/jgen.19846
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
De Novo Assembly of the Liver Transcriptome of the European Starling, Sturnus vulgaris
Mark F. Richardson, William B. Sherwin, Lee A. Rollins
J. Genomics 2017; 5: 54-57. doi:10.7150/jgen.19504
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
CNV Analysis of Host Responses to Porcine Reproductive and Respiratory Syndrome Virus Infection
El Hamidi A. Hay, Igseo Choi, Lingyang Xu, Yang Zhou, Robert R. R. Rowland, Joan K. Lunney, George E. Liu
J. Genomics 2017; 5: 58-63. doi:10.7150/jgen.20358
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft Genome Sequence of the Symbiotic Frankia Sp. Strain KB5 Isolated from Root Nodules of Casuarina equisetifolia
Céline Pesce, Erik Swanson, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Louis S. Tisa, Anita Sellstedt
J. Genomics 2017; 5: 64-67. doi:10.7150/jgen.20887
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft Genome Sequence of a Virulent Strain of Pasteurella Multocida Isolated From Alpaca
Raquel Enma Hurtado, Flavia Aburjaile, Diego Mariano, Marcus Vinicius Canário, Leandro Benevides, Daniel Antonio Fernandez, Nataly Olivia Allasi, Rocio Rimac, Julio Eduardo Juscamayta, Jorge Enrique Maximiliano, Raul Hector Rosadio, Vasco Azevedo, Lenin Maturrano
J. Genomics 2017; 5: 68-70. doi:10.7150/jgen.19297
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Complete Genome Sequence and Comparative Genomics of a Streptococcus pyogenes emm3 Strain M3-b isolated from a Japanese Patient with Streptococcal Toxic Shock Syndrome
Kohei Ogura, Shinya Watanabe, Teruo Kirikae, Tohru Miyoshi-Akiyama
J. Genomics 2017; 5: 71-74. doi:10.7150/jgen.20915
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Complete Genome Sequence of Actinomadura Parvosata Subsp. Kistnae, A Rich Source of Novel Natural Product (Bio-)Chemistry
Kalina Kusserow, Tobias A. M. Gulder
J. Genomics 2017; 5: 75-76. doi:10.7150/jgen.19673
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
A glimpse into the genetic basis of symbiosis between Hydrogenophaga and their helper strains in the biodegradation of 4-aminobenzenesulfonate
Kangsan Kim, Han Ming Gan
J. Genomics 2017; 5: 77-82. doi:10.7150/jgen.20216
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft genome and SNPs associated with carotenoid accumulation in adductor muscles of bay scallop (Argopecten irradians)
Xuedi Du, Kai Song, Jinpeng Wang, Rihao Cong, Li Li, Guofan Zhang
J. Genomics 2017; 5: 83-90. doi:10.7150/jgen.19146
[Abstract] [Full text] [PDF] [PubMed] [PMC]